Application Tracks¶
Audience: L2-L4 (Users and Administrators) | Modules: 4
Dedicated guides for running life science applications on Slurm. Each application has an admin module (setup and configuration) and a user module (daily workflows).
Schrodinger Suite + Slurm¶
Schrodinger Suite is a computational chemistry platform used for drug discovery, materials science, and molecular modeling.
| Module | Audience | What You'll Learn |
|---|---|---|
| Admin Setup | L4 | SLM licensing, hosts file/hosts.yml, GPU config, Job Server, license-aware scheduling |
| User Guide | L2-L3 | -HOST flag, -NPROC, Maestro submission, monitoring, troubleshooting |
Prerequisites: Getting Started + End-User Essentials for the user module. Administrator track for the admin module.
CryoSPARC + Slurm¶
CryoSPARC is a cryo-EM data processing platform for single particle analysis and tomography.
| Module | Audience | What You'll Learn |
|---|---|---|
| Admin Setup | L4 | Cluster lanes, cluster_info.json, cluster_script.sh, GPU management, CryoSPARC Live |
| User Guide | L2-L3 | Lane selection, resource settings, monitoring, failure diagnosis, SSD caching |
Prerequisites: Getting Started + End-User Essentials for the user module. Administrator track (especially GPU and GRES) for the admin module.
Related¶
- GPU fundamentals: GPU Jobs covers Slurm GPU scheduling concepts used by both applications
- Resource management: Resource Management covers GRES configuration needed for GPU applications
- All tracks at a glance: Training Tracks Guide